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@neuroinformatics-unit

SWC/GCNU Neuroinformatics Unit

Neuroscience & ML Research Software Engineering Group
README.md

Neuroinformatics Unit

The Neuroinformatics Unit (NIU) is a Research Software Engineering team based at the Sainsbury Wellcome Centre and the Gatsby Computational Neuroscience Unit.

The NIU is dedicated to the development of high quality, accurate, robust, easy to use and maintainable open-source software for neuroscience and machine learning. We collaborate with researchers and other software engineers to advance research in the two research centres and make new algorithms and tools available to the global community.

We also lead development of the BrainGlobe Initiative and contribute to various Sainsbury Wellcome Centre and other open-source tools.

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  1. movement movement Public

    A Python toolbox for analysing body movements across space and time

    Python 180 62

  2. NeuroBlueprint NeuroBlueprint Public

    Lightweight data specification for systems neuroscience, inspired by BIDS.

    19 4

  3. datashuttle datashuttle Public

    Tool for the creation, validation and transfer of neuroscience project folders.

    Python 24 22

  4. python-cookiecutter python-cookiecutter Public

    Utility to create a basic Python project structure with tests, CI etc.

    Python 28 5

  5. fancylog fancylog Public

    Fancier logging with python.

    Python 12 4

  6. spikewrap spikewrap Public

    A package to manage electrophysiology analysis.

    Python 22 15

Repositories

Showing 10 of 62 repositories
  • swc-slack Public

    Tools to interface with slack

    neuroinformatics-unit/swc-slack’s past year of commit activity
    Python 7 BSD-3-Clause 1 0 1 Updated May 5, 2025
  • spikewrap Public

    A package to manage electrophysiology analysis.

    neuroinformatics-unit/spikewrap’s past year of commit activity
    Python 22 BSD-3-Clause 15 18 5 Updated May 5, 2025
  • slurmio Public

    Python tools to read SLURM job parameters.

    neuroinformatics-unit/slurmio’s past year of commit activity
    Python 7 MIT 1 0 1 Updated May 5, 2025
  • qt-niu Public

    Reusable Qt elements

    neuroinformatics-unit/qt-niu’s past year of commit activity
    Python 3 MIT 0 0 1 Updated May 5, 2025
  • python-cookiecutter Public

    Utility to create a basic Python project structure with tests, CI etc.

    neuroinformatics-unit/python-cookiecutter’s past year of commit activity
    Python 28 BSD-3-Clause 5 14 1 Updated May 5, 2025
  • movement Public

    A Python toolbox for analysing body movements across space and time

    neuroinformatics-unit/movement’s past year of commit activity
    Python 180 BSD-3-Clause 62 102 (1 issue needs help) 43 Updated May 5, 2025
  • ethology Public

    Data processing tools for animal behavioural analysis

    neuroinformatics-unit/ethology’s past year of commit activity
    Python 17 BSD-3-Clause 18 27 18 Updated May 5, 2025
  • fancylog Public

    Fancier logging with python.

    neuroinformatics-unit/fancylog’s past year of commit activity
    Python 12 BSD-3-Clause 4 5 1 Updated May 5, 2025
  • datashuttle Public

    Tool for the creation, validation and transfer of neuroscience project folders.

    neuroinformatics-unit/datashuttle’s past year of commit activity
    Python 24 BSD-3-Clause 22 44 (1 issue needs help) 19 Updated May 5, 2025
  • photon-mosaic Public

    Automated and reproducible analysis of multiphoton calcium imaging datasets

    neuroinformatics-unit/photon-mosaic’s past year of commit activity
    Python 4 GPL-3.0 0 1 1 Updated May 2, 2025
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