A curated, public list of resources for biomechanics and human motion analysis: datasets, processing tools, software for simulation, educational videos, lectures, etc.

A Go package for engineering organisms.

Computational synthetic biology: Predicting DNA edits for bioengineering

Materials to reproduce the results of our paper about 3D muscle modelling.

Software for predicting translation initiation rates in bacteria

Scripts and models to optimize musculotendon parameters in musculoskeletal models.

Portable WiFi Connected IoT ECG Monitor 📈💕

Computer-Aided Process Planner (CAPP) for Synthetic Biology Research

A general Python framework for using hidden Markov models on binary trees or cell lineage trees.

nanoDNA-nanoROBOT-simulation: Open-source Python project for modeling and simulating DNA-based nanorobot behavior. 🧬🤖

CARE! PROTOTYPE! The gcode composer is a tool to plan experiments with the nydus one open source bioprinter.

Combined study of two biological signals: EEG Power Variability and Middle Cerebral Artery Blood Flow Velocity

Plasmid Designer and DNA Editor

A command-line interface and biochemical pathway finder based on KEGG

Medicamina user interface

Procedural Plumbing for Bioengineers

MATLAB toolbox/client for the Blackfynn platform

A transformer-based masked language model for learning amino acid sequence representations. The model uses self-attention mechanisms with custom gating and incorporates protein features for enhanced sequence understanding. Trained using BERT-style masking on peptide sequences to learn contextual amino acid embeddings.